If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 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'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 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'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ), 'gf_id' => 'HOM05D000659', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000659' ), 'data_identifier' => 'HOM05D000659', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000659', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '863', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p14380' => 'bna', 'A03p03170' => 'bna', 'A04p05880' => 'bna', 'A04p22010' => 'bna', 'A05p18890' => 'bna', 'A06p01740' => 'bna', 'A06p08940' => 'bna', 'A07p19460' => 'bna', 'A07p43140' => 'bna', 'A09p13470' => 'bna', 'A09p15670' => 'bna', 'A09p37410' => 'bna', 'A09p46750' => 'bna', 'A10p29010' => 'bna', 'A10p29020' => 'bna', 'Aa31LG10G2430' => 'aar', 'Aa31LG10G9250' => 'aar', 'Aa31LG1G1990' => 'aar', 'Aa31LG2G610' => 'aar', 'Aa31LG3G19120' => 'aar', 'Aa31LG4G7950' => 'aar', 'Aa31LG5G7190' => 'aar', 'Aa31LG6G5110' => 'aar', 'Aa31LG6G6590' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.789' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.959' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3334' => 'aag', 'Actinidia02034' => 'ach', 'Actinidia03113' => 'ach', 'Actinidia05317' => 'ach', 'Actinidia14530' => 'ach', 'Actinidia23307' => 'ach', 'Actinidia23934' => 'ach', 'Actinidia26474' => 'ach', 'Actinidia31811' => 'ach', 'Actinidia32882' => 'ach', 'Actinidia34091' => 'ach', 'Ah.01g020710' => 'amhyb', 'Ah.02g116450' => 'amhyb', 'Ah.12g057540' => 'amhyb', 'Ah.12g059900' => 'amhyb', 'AL1G24340' => 'aly', 'AL1G60860' => 'aly', 'AL2G12390' => 'aly', 'AL2G38100' => 'aly', 'AL2G38140' => 'aly', 'AL4G23610' => 'aly', 'AL5G34770' => 'aly', 'AL6G17500' => 'aly', 'AL7G30430' => 'aly', 'Aqoxy355s001' => 'aox', 'Aqoxy5G02495' => 'aox', 'Aqoxy5G03971' => 'aox', 'Aqoxy7G00408' => 'aox', 'Aqoxy7G02229' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0EX7CA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.339UAX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5C0H6R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5X7K37' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.79RH6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8E3F1S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8YZX6V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H5PCZM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J0S0NC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NX6EG4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REVT0J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S40QI3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SNC62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0TPUK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V8QUIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBH53Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VFZ35Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZBLA49' => 'arhy', 'AT1G12750' => 'ath', 'AT1G52580' => 'ath', 'AT1G63120' => 'ath', 'AT1G77860' => 'ath', 'AT2G29050' => 'ath', 'AT3G53780' => 'ath', 'AT4G23070' => 'ath', 'AT5G07250' => 'ath', 'ATR0322G063' => 'atr', 'ATR0559G131' => 'atr', 'ATR0559G137' => 'atr', 'ATR0757G190' => 'atr', 'ATR1134G036' => 'atr', 'Atru.chr1.3006' => 'acertr', 'Atru.chr1.3008' => 'acertr', 'Atru.chr1.502' => 'acertr', 'Atru.chr13.1302' => 'acertr', 'Atru.chr3.3945' => 'acertr', 'Atru.chr8.1985' => 'acertr', 'Atru.chr9.1555' => 'acertr', 'AUR62001774' => 'cqu', 'AUR62004680' => 'cqu', 'AUR62009562' => 'cqu', 'AUR62010638' => 'cqu', 'AUR62011535' => 'cqu', 'AUR62016016' => 'cqu', 'AUR62016354' => 'cqu', 'AUR62017281' => 'cqu', 'AUR62021221' => 'cqu', 'AUR62023598' => 'cqu', 'BcaB01g00237' => 'bca', 'BcaB01g00551' => 'bca', 'BcaB01g06352' => 'bca', 'BcaB02g07136' => 'bca', 'BcaB02g08507' => 'bca', 'BcaB02g10226' => 'bca', 'BcaB02g10980' => 'bca', 'BcaB03g15915' => 'bca', 'BcaB03g15921' => 'bca', 'BcaB07g31385' => 'bca', 'BcaC02g08115' => 'bca', 'BcaC02g08116' => 'bca', 'BcaC02g08117' => 'bca', 'BcaC02g08118' => 'bca', 'BcaC02g09131' => 'bca', 'BcaC02g11038' => 'bca', 'BcaC04g22473' => 'bca', 'BcaC04g22718' => 'bca', 'BcaC05g25117' => 'bca', 'BcaC05g25160' => 'bca', 'BcaC06g31937' => 'bca', 'BcaC06g32457' => 'bca', 'BcaC06g32458' => 'bca', 'BcaC07g39736' => 'bca', 'BcaC08g43431' => 'bca', 'BcaC08g44005' => 'bca', 'BcaC09g51029' => 'bca', 'BcaNung00997' => 'bca', 'BolC1t01704H' => 'bol', 'BolC3t12899H' => 'bol', 'BolC4t23710H' => 'bol', 'BolC4t25452H' => 'bol', 'BolC5t29800H' => 'bol', 'BolC6t35883H' => 'bol', 'BolC6t36592H' => 'bol', 'BolC6t40201H' => 'bol', 'BolC8t50509H' => 'bol', 'BolC9t54508H' => 'bol', 'BolC9t54792H' => 'bol', 'BolC9t59681H' => 'bol', 'BolC9t59682H' => 'bol', 'BraA01t01383Z' => 'bra', 'BraA03t09673Z' => 'bra', 'BraA04t16287Z' => 'bra', 'BraA04t17769Z' => 'bra', 'BraA05t20786Z' => 'bra', 'BraA06t23393Z' => 'bra', 'BraA06t24086Z' => 'bra', 'BraA07t29652Z' => 'bra', 'BraA07t31836Z' => 'bra', 'BraA09t36998Z' => 'bra', 'BraA09t37208Z' => 'bra', 'BraA10t44949Z' => 'bra', 'BraA10t44950Z' => 'bra', 'C01p17690' => 'bna', 'C03p03590' => 'bna', 'C04p21910' => 'bna', 'C04p21920' => 'bna', 'C04p38790' => 'bna', 'C05p10550' => 'bna', 'C06p08000' => 'bna', 'C06p14140' => 'bna', 'C06p51790' => 'bna', 'C08p29080' => 'bna', 'C09p15970' => 'bna', 'C09p18900' => 'bna', 'C09p69370' => 'bna', 'C09p69380' => 'bna', 'CAN.G393.2' => 'can', 'CAN.G499.4' => 'can', 'CAN.G632.3' => 'can', 'CAN.G769.7' => 'can', 'CAN.G981.15' => 'can', 'CANSAT21G1384' => 'cansat', 'CANSAT21G2342' => 'cansat', 'CANSAT25G1800' => 'cansat', 'CANSAT35G0932' => 'cansat', 'CANSAT54G1370' => 'cansat', 'CARHR013040' => 'chi', 'CARHR042710' => 'chi', 'CARHR048380' => 'chi', 'CARHR071350' => 'chi', 'CARHR122280' => 'chi', 'CARHR163680' => 'chi', 'CARHR205890' => 'chi', 'CARHR230130' => 'chi', 'Carub.0001s1245' => 'cru', 'Carub.0001s4158' => 'cru', 'Carub.0002s0182' => 'cru', 'Carub.0002s2476' => 'cru', 'Carub.0004s1004' => 'cru', 'Carub.0005s2036' => 'cru', 'Carub.0006s0621' => 'cru', 'Carub.0007s1820' => 'cru', 'Ca_01062_v3' => 'car', 'Ca_01320_v3' => 'car', 'Ca_10788_v3' => 'car', 'Ca_25769_v3' => 'car', 'Ca_26208_v3' => 'car', 'Ca_26373_v3' => 'car', 'CBR_g18629' => 'cbr', 'CBR_g19877' => 'cbr', 'CBR_g19880' => 'cbr', 'CBR_g34462' => 'cbr', 'CBR_g34468' => 'cbr', 'CBR_g36453' => 'cbr', 'CBR_g51123' => 'cbr', 'CBR_g57074' => 'cbr', 'CBR_g57076' => 'cbr', 'Cc00_g08980' => 'ccan', 'Cc00_g29900' => 'ccan', 'Cc01_g12990' => 'ccan', 'Cc02_g03290' => 'ccan', 'Cc06_g02550' => 'ccan', 'Cc08_g14130' => 'ccan', 'Cc09_g10540' => 'ccan', 'CDE02G2574' => 'cde', 'CDE09G1169' => 'cde', 'CDE09G1440' => 'cde', 'Cfa008291' => 'cfa', 'Cfa011515' => 'cfa', 'Cfa012116' => 'cfa', 'Cfa017366' => 'cfa', 'Ciclev10001408m.g' => 'ccl', 'Ciclev10005384m.g' => 'ccl', 'Ciclev10011927m.g' => 'ccl', 'Ciclev10021119m.g' => 'ccl', 'Ciclev10027389m.g' => 'ccl', 'Ciclev10027437m.g' => 'ccl', 'Ciclev10028496m.g' => 'ccl', 'CiPaw.01G246100' => 'cil', 'CiPaw.03G103700' => 'cil', 'CiPaw.04G066300' => 'cil', 'CiPaw.04G139000' => 'cil', 'CiPaw.05G230700' => 'cil', 'CiPaw.09G193500' => 'cil', 'CiPaw.11G140000' => 'cil', 'CiPaw.12G097400' => 'cil', 'ClCG00G000250' => 'cla', 'ClCG00G003610' => 'cla', 'ClCG01G003060' => 'cla', 'ClCG03G001440' => 'cla', 'ClCG05G007890' => 'cla', 'ClCG08G010890' => 'cla', 'ClCG09G002840' => 'cla', 'ClCG10G003510' => 'cla', 'ClCG10G021190' => 'cla', 'COL.COLO4_05258' => 'col', 'COL.COLO4_14276' => 'col', 'COL.COLO4_14787' => 'col', 'COL.COLO4_16524' => 'col', 'COL.COLO4_18525' => 'col', 'COL.COLO4_37395' => 'col', 'Cpa.g.sc10.241' => 'cpa', 'Cpa.g.sc107.24' => 'cpa', 'Cpa.g.sc188.5' => 'cpa', 'Cpa.g.sc49.116' => 'cpa', 'Cpa.g.sc74.71' => 'cpa', 'Cpa.g.sc81.133' => 'cpa', 'Cre03.g144084' => 'cre', 'Cre03.g145527' => 'cre', 'Cre03.g188600' => 'cre', 'CsaV3_1G023040' => 'csa', 'CsaV3_1G034330' => 'csa', 'CsaV3_3G003520' => 'csa', 'CsaV3_3G016900' => 'csa', 'CsaV3_3G034860' => 'csa', 'CsaV3_5G003180' => 'csa', 'CsaV3_7G032490' => 'csa', 'CSS0002006' => 'camsi', 'CSS0003078' => 'camsi', 'CSS0003679' => 'camsi', 'CSS0014807' => 'camsi', 'CSS0016324' => 'camsi', 'CSS0018346' => 'camsi', 'CSS0020111' => 'camsi', 'CSS0021529' => 'camsi', 'CSS0022496' => 'camsi', 'CSS0043368' => 'camsi', 'DCAR_005965' => 'dca', 'DCAR_012096' => 'dca', 'DCAR_014594' => 'dca', 'DCAR_014785' => 'dca', 'DCAR_028748' => 'dca', 'Dinv04177' => 'din', 'Dinv06184' => 'din', 'Dinv09581' => 'din', 'Dinv17016' => 'din', 'Dinv28468' => 'din', 'Dinv35190' => 'din', 'Dinv35592' => 'din', 'Dinv37164' => 'din', 'Dinv37678' => 'din', 'Dinv38446' => 'din', 'Dinv38998' => 'din', 'Dinv42964' => 'din', 'Dinv43135' => 'din', 'Dinv43476' => 'din', 'Duzib068G0208' => 'dzi', 'Duzib068G1094' => 'dzi', 'Duzib084G0438' => 'dzi', 'Duzib084G0579' => 'dzi', 'Duzib093G2115' => 'dzi', 'Duzib106G0001' => 'dzi', 'Duzib116G0703' => 'dzi', 'Duzib150G1642' => 'dzi', 'Duzib160G0408' => 'dzi', 'Duzib168G0711' => 'dzi', 'Duzib170G0196' => 'dzi', 'Duzib205G0994' => 'dzi', 'Duzib235G0438' => 'dzi', 'ECA232G2175' => 'eca', 'ECA233G4719' => 'eca', 'ECA236G1289' => 'eca', 'ECA236G3352' => 'eca', 'ECA246G0660' => 'eca', 'ECA247G3352' => 'eca', 'EL10Ac3g05719' => 'bvu', 'EL10Ac5g11974' => 'bvu', 'EL10Ac5g12743' => 'bvu', 'EL10Ac7g16031' => 'bvu', 'EL10Ac9g21915' => 'bvu', 'EL10As1g23042' => 'bvu', 'Eucgr.A01271' => 'egr', 'Eucgr.A02806' => 'egr', 'Eucgr.D01914' => 'egr', 'Eucgr.E00540' => 'egr', 'Eucgr.F04386' => 'egr', 'Eucgr.J02047' => 'egr', 'Eucgr.J03060' => 'egr', 'Eucgr.K03129' => 'egr', 'FAN01G0858' => 'fan', 'FAN02G1103' => 'fan', 'FAN02G3154' => 'fan', 'FAN03G0572' => 'fan', 'FAN03G2681' => 'fan', 'FAN04G1137' => 'fan', 'FAN04G1261' => 'fan', 'FAN05G0281' => 'fan', 'FAN05G2315' => 'fan', 'FAN05G4775' => 'fan', 'FAN05G5312' => 'fan', 'FAN06G1231' => 'fan', 'FAN06G2618' => 'fan', 'FAN08G0073' => 'fan', 'FAN08G3133' => 'fan', 'FAN09G0314' => 'fan', 'FAN09G0497' => 'fan', 'FAN09G4786' => 'fan', 'FAN10G1662' => 'fan', 'FAN11G0746' => 'fan', 'FAN13G0177' => 'fan', 'FAN13G1446' => 'fan', 'FAN14G2971' => 'fan', 'FAN14G4171' => 'fan', 'FAN14G5723' => 'fan', 'FAN16G0057' => 'fan', 'FAN18G0884' => 'fan', 'FAN21G2922' => 'fan', 'FAN25G2711' => 'fan', 'FAN26G1534' => 'fan', 'FvH4_3g36420' => 'fve', 'FvH4_5g01700' => 'fve', 'FvH4_5g38430' => 'fve', 'FvH4_6g13560' => 'fve', 'FvH4_6g29980' => 'fve', 'FvH4_6g29990' => 'fve', 'FvH4_7g29110' => 'fve', 'Glyma.03G079800' => 'gma', 'Glyma.04G254500' => 'gma', 'Glyma.06G107600' => 'gma', 'Glyma.07G132800' => 'gma', 'Glyma.09G143800' => 'gma', 'Glyma.10G238200' => 'gma', 'Glyma.13G336700' => 'gma', 'Glyma.15G009000' => 'gma', 'Glyma.15G037600' => 'gma', 'Glyma.16G196800' => 'gma', 'Glyma.18G153100' => 'gma', 'Glyma.18G181800' => 'gma', 'Glyma.20G156400' => 'gma', 'Gohir.A03G017900' => 'ghi', 'Gohir.A03G043100' => 'ghi', 'Gohir.A05G095000' => 'ghi', 'Gohir.A06G040000' => 'ghi', 'Gohir.A06G186300' => 'ghi', 'Gohir.A08G179100' => 'ghi', 'Gohir.A09G155400' => 'ghi', 'Gohir.A09G180000' => 'ghi', 'Gohir.A12G225600' => 'ghi', 'Gohir.A12G259900' => 'ghi', 'Gohir.D01G112600' => 'ghi', 'Gohir.D03G124200' => 'ghi', 'Gohir.D03G153600' => 'ghi', 'Gohir.D05G095400' => 'ghi', 'Gohir.D06G041000' => 'ghi', 'Gohir.D06G192600' => 'ghi', 'Gohir.D08G197700' => 'ghi', 'Gohir.D09G037366' => 'ghi', 'Gohir.D09G101900' => 'ghi', 'Gohir.D09G150900' => 'ghi', 'Gohir.D10G142250' => 'ghi', 'Gohir.D11G007800' => 'ghi', 'Gohir.D11G029100' => 'ghi', 'Gohir.D12G138500' => 'ghi', 'Gohir.D12G224000' => 'ghi', 'Gohir.D12G228150' => 'ghi', 'Gohir.D12G260700' => 'ghi', 'Gohir.D13G111850' => 'ghi', 'Gorai.001G171200' => 'gra', 'Gorai.003G130900' => 'gra', 'Gorai.003G161200' => 'gra', 'Gorai.004G208500' => 'gra', 'Gorai.005G090100' => 'gra', 'Gorai.006G172200' => 'gra', 'Gorai.008G244200' => 'gra', 'Gorai.008G279300' => 'gra', 'Gorai.009G098700' => 'gra', 'Gorai.010G045800' => 'gra', 'Gorai.010G226400' => 'gra', 'Gorai.013G078400' => 'gra', 'Gorai.013G107900' => 'gra', 'GSVIVG01008957001' => 'vvi', 'GSVIVG01010602001' => 'vvi', 'GSVIVG01017301001' => 'vvi', 'GSVIVG01019824001' => 'vvi', 'GSVIVG01024943001' => 'vvi', 'GSVIVG01034160001' => 'vvi', 'HanXRQChr02g0048781' => 'han', 'HanXRQChr04g0125491' => 'han', 'HanXRQChr05g0134971' => 'han', 'HanXRQChr05g0134981' => 'han', 'HanXRQChr06g0178011' => 'han', 'HanXRQChr07g0197301' => 'han', 'HanXRQChr15g0486401' => 'han', 'HanXRQChr17g0533731' => 'han', 'Haze_00542' => 'cav', 'Haze_08934' => 'cav', 'Haze_13742' => 'cav', 'Haze_16534' => 'cav', 'Haze_20805' => 'cav', 'Haze_24112' => 'cav', 'Hma1.2p1_0270F.1_g108320' => 'hma', 'Hma1.2p1_0374F.1_g138510' => 'hma', 'Hma1.2p1_0514F.1_g170000' => 'hma', 'Hma1.2p1_0615F.1_g189890' => 'hma', 'Hma1.2p1_0805F.1_g221215' => 'hma', 'Hma1.2p1_0805F.1_g221220' => 'hma', 'Hma1.2p1_0936F.1_g238780' => 'hma', 'Hma1.2p1_1323F.1_g275530' => 'hma', 'Hma1.2p1_1889F.1_g306620' => 'hma', 'Hma1.2p1_2197F.1_g316900' => 'hma', 'HPP92_000665' => 'vpl', 'HPP92_015038' => 'vpl', 'HPP92_015101' => 'vpl', 'HPP92_019423' => 'vpl', 'HPP92_019442' => 'vpl', 'HPP92_022369' => 'vpl', 'HPP92_026923' => 'vpl', 'Hund00529' => 'sun', 'Hund00530' => 'sun', 'Hund00534' => 'sun', 'Hund00535' => 'sun', 'Hund04948' => 'sun', 'Hund11518' => 'sun', 'Hund15418' => 'sun', 'Lalb_Chr03g0026591' => 'lal', 'Lalb_Chr03g0026601' => 'lal', 'Lalb_Chr03g0034381' => 'lal', 'Lalb_Chr07g0193861' => 'lal', 'Lalb_Chr11g0065601' => 'lal', 'Lalb_Chr11g0065611' => 'lal', 'Lalb_Chr14g0373771' => 'lal', 'Lalb_Chr14g0375121' => 'lal', 'Lalb_Chr19g0130981' => 'lal', 'Lalb_Chr19g0137871' => 'lal', 'Lalb_Chr22g0350911' => 'lal', 'Lalb_Chr24g0394101' => 'lal', 'Lj1A994T58' => 'lonja', 'Lj1C150T4' => 'lonja', 'Lj1g0015715' => 'lja', 'Lj1g0026316' => 'lja', 'Lj2A193T56' => 'lonja', 'Lj2C1064T15' => 'lonja', 'Lj2C1064T16' => 'lonja', 'Lj2C93T10' => 'lonja', 'Lj2g0005987' => 'lja', 'Lj3g0008496' => 'lja', 'Lj3g0014536' => 'lja', 'Lj3g0020272' => 'lja', 'Lj6A710G15' => 'lonja', 'Lj6C710G11' => 'lonja', 'Lj7A305T43' => 'lonja', 'Lj7C305T15' => 'lonja', 'Lj8A27T92' => 'lonja', 'LjContig00238g0018309' => 'lja', 'Lsat_1_v5_gn_3_5360' => 'lsa', 'Lsat_1_v5_gn_6_7060' => 'lsa', 'Lsat_1_v5_gn_8_73821' => 'lsa', 'Lsat_1_v5_gn_8_85400' => 'lsa', 'Lsat_1_v5_gn_9_23621' => 'lsa', 'Lsat_1_v5_gn_9_54280' => 'lsa', 'Manes.01G172500' => 'mes', 'Manes.01G172600' => 'mes', 'Manes.02G026500' => 'mes', 'Manes.02G131700' => 'mes', 'Manes.04G114901' => 'mes', 'Manes.06G145200' => 'mes', 'Manes.09G093300' => 'mes', 'Manes.14G028201' => 'mes', 'Manes.18G071900' => 'mes', 'Mapoly0002s0277' => 'mpo', 'Mapoly0097s0088' => 'mpo', 'MBI04_g00311_MAGBIO' => 'mbi', 'MBI04_g08012_MAGBIO' => 'mbi', 'MBI12_g15163_MAGBIO' => 'mbi', 'MBI17_g01765_MAGBIO' => 'mbi', 'MD00G1013900' => 'mdo', 'MD00G1022400' => 'mdo', 'MD00G1143800' => 'mdo', 'MD00G1178600' => 'mdo', 'MD00G1178800' => 'mdo', 'MD01G1198000' => 'mdo', 'MD03G1090500' => 'mdo', 'MD04G1065500' => 'mdo', 'MD04G1130000' => 'mdo', 'MD07G1265400' => 'mdo', 'MD07G1265600' => 'mdo', 'MD08G1173800' => 'mdo', 'MD11G1100200' => 'mdo', 'MD11G1101200' => 'mdo', 'MD11G1101800' => 'mdo', 'MD11G1102100' => 'mdo', 'MD11G1103000' => 'mdo', 'MD11G1103500' => 'mdo', 'MD11G1103900' => 'mdo', 'MD11G1104300' => 'mdo', 'MD11G1105000' => 'mdo', 'MD11G1105300' => 'mdo', 'MD11G1106000' => 'mdo', 'MD11G1106300' => 'mdo', 'MD11G1106500' => 'mdo', 'MD11G1107000' => 'mdo', 'MD11G1107900' => 'mdo', 'MD11G1108000' => 'mdo', 'MD11G1261200' => 'mdo', 'MD12G1143100' => 'mdo', 'MD15G1402100' => 'mdo', 'Medtr1g101310' => 'mtr', 'Medtr2g088290' => 'mtr', 'Medtr2g088310' => 'mtr', 'Medtr2g088315' => 'mtr', 'Medtr2g097210' => 'mtr', 'Medtr2g103600' => 'mtr', 'Medtr3g073530' => 'mtr', 'Medtr4g021755' => 'mtr', 'Medtr6g089790' => 'mtr', 'Medtr7g061780' => 'mtr', 'Medtr7g498280' => 'mtr', 'Medtr8g104370' => 'mtr', 'Medtr8g106030' => 'mtr', 'MELO3C005637.2' => 'cme', 'MELO3C006885.2' => 'cme', 'MELO3C009254.2' => 'cme', 'MELO3C011374.2' => 'cme', 'MELO3C014019.2' => 'cme', 'MELO3C020625.2' => 'cme', 'MELO3C023414.2' => 'cme', 'Migut.A00935' => 'egut', 'Migut.D02085' => 'egut', 'Migut.E01285' => 'egut', 'Migut.F00363' => 'egut', 'Migut.I00631' => 'egut', 'Migut.J00323' => 'egut', 'Migut.L01950' => 'egut', 'MSTRG.13826' => 'ama', 'MSTRG.1890' => 'ama', 'MSTRG.19079' => 'ama', 'MSTRG.21213' => 'ama', 'MSTRG.5657' => 'ama', 'MSTRG.8755' => 'ama', 'Nitab4.5_0000051g0300' => 'nta', 'Nitab4.5_0000272g0090' => 'nta', 'Nitab4.5_0000705g0200' => 'nta', 'Nitab4.5_0002107g0030' => 'nta', 'Nitab4.5_0002961g0010' => 'nta', 'Nitab4.5_0003924g0050' => 'nta', 'Nitab4.5_0003943g0050' => 'nta', 'Nitab4.5_0004843g0020' => 'nta', 'Nitab4.5_0005213g0020' => 'nta', 'Nitab4.5_0011443g0020' => 'nta', 'Nn2g11134' => 'nnu', 'Nn2g12017' => 'nnu', 'Nn2g13367' => 'nnu', 'Nn5g27918' => 'nnu', 'Nn6g34219' => 'nnu', 'Nn8g39446' => 'nnu', 'Oeu008964.1' => 'oeu', 'Oeu030114.1' => 'oeu', 'Oeu036134.1' => 'oeu', 'Oeu056230.1' => 'oeu', 'Oeu062740.1' => 'oeu', 'Oeu064113.1' => 'oeu', 'Os01g0147300' => 'osa', 'Os03g0116400' => 'osa', 'Os04g0569300' => 'osa', 'Os08g0546700' => 'osa', 'Os09g0525900' => 'osa', 'Os10g0521900' => 'osa', 'Os11g0704800' => 'osa', 'Peaxi162Scf00040g00319' => 'pax', 'Peaxi162Scf00040g00421' => 'pax', 'Peaxi162Scf00040g00422' => 'pax', 'Peaxi162Scf00075g01713' => 'pax', 'Peaxi162Scf00122g01510' => 'pax', 'Peaxi162Scf00165g00912' => 'pax', 'Peaxi162Scf00714g00429' => 'pax', 'Peaxi162Scf00915g00120' => 'pax', 'PGR004G1090' => 'pgr', 'PGR004G2590' => 'pgr', 'PGR031G2400' => 'pgr', 'PGR031G2918' => 'pgr', 'PGR042G1240' => 'pgr', 'PGR042G2602' => 'pgr', 'PGR044G1081' => 'pgr', 'PGR119G2445' => 'pgr', 'PGSC0003DMG400003050' => 'stu', 'PGSC0003DMG400004402' => 'stu', 'PGSC0003DMG400006548' => 'stu', 'PGSC0003DMG400008831' => 'stu', 'PGSC0003DMG400014321' => 'stu', 'Phvul.004G120400' => 'pvu', 'Phvul.005G176900' => 'pvu', 'Phvul.007G067300' => 'pvu', 'Phvul.009G026550' => 'pvu', 'Phvul.009G026625' => 'pvu', 'Phvul.010G009600' => 'pvu', 'Phvul.L006143' => 'pvu', 'Potri.001G108700' => 'ptr', 'Potri.001G241300' => 'ptr', 'Potri.002G090400' => 'ptr', 'Potri.003G122900' => 'ptr', 'Potri.006G086300' => 'ptr', 'Potri.009G031900' => 'ptr', 'Potri.012G139600' => 'ptr', 'Potri.015G142000' => 'ptr', 'Pp3c14_10400' => 'ppa', 'Pp3c17_14100' => 'ppa', 'Pp3c18_13020' => 'ppa', 'Pp3c20_8630' => 'ppa', 'Pp3c23_15050' => 'ppa', 'Pp3c2_10440' => 'ppa', 'Pp3c5_3090' => 'ppa', 'PRCOL_00003696' => 'pco', 'PRCOL_00004536' => 'pco', 'Prupe.1G507800' => 'ppe', 'Prupe.2G291300' => 'ppe', 'Prupe.3G083600' => 'ppe', 'Prupe.3G083700' => 'ppe', 'Prupe.5G092700' => 'ppe', 'Prupe.6G074600' => 'ppe', 'Prupe.6G256700' => 'ppe', 'Psat0s1792g0040' => 'psa', 'Psat3g009960' => 'psa', 'Psat3g138880' => 'psa', 'Psat5g065640' => 'psa', 'Psat5g136640' => 'psa', 'Psat5g286600' => 'psa', 'Psat5g301800' => 'psa', 'Psat6g199120' => 'psa', 'Psat6g241880' => 'psa', 'Psat7g235400' => 'psa', 'PSO017G4878' => 'pso', 'PSO151G0233' => 'pso', 'PSO170G0895' => 'pso', 'PSO170G5743' => 'pso', 'PSO339G3373' => 'pso', 'PSO455G0034' => 'pso', 'PSO478G3726' => 'pso', 'PSO782G1810' => 'pso', 'QL01p031553' => 'qlo', 'QL05p028355' => 'qlo', 'QL07p048588' => 'qlo', 'QL09p014739' => 'qlo', 'QL12p017504' => 'qlo', 'QL12p035480' => 'qlo', 'RcHm_v2.0_Chr1g0376861' => 'rch', 'RcHm_v2.0_Chr2g0135991' => 'rch', 'RcHm_v2.0_Chr2g0136001' => 'rch', 'RcHm_v2.0_Chr2g0136011' => 'rch', 'RcHm_v2.0_Chr3g0466421' => 'rch', 'RcHm_v2.0_Chr5g0065311' => 'rch', 'RcHm_v2.0_Chr6g0309851' => 'rch', 'RcHm_v2.0_Chr7g0199021' => 'rch', 'RcHm_v2.0_Chr7g0240461' => 'rch', 'Rhsim01G0229200' => 'rsi', 'Rhsim04G0157700' => 'rsi', 'Rhsim05G0193700' => 'rsi', 'Rhsim06G0110200' => 'rsi', 'Rhsim07G0093600' => 'rsi', 'Rhsim09G0197000' => 'rsi', 'Sabra01G0082100' => 'sbr', 'Sabra02G0071300' => 'sbr', 'Sabra03G0086700' => 'sbr', 'Sabra06G0065900' => 'sbr', 'Sabra09G0022600' => 'sbr', 'Sabra12G0104700' => 'sbr', 'Sabra15G0152200' => 'sbr', 'Sabra16G0145700' => 'sbr', 'SalBow1G2322' => 'sbo', 'SalBow1G5245' => 'sbo', 'SalBow3G0461' => 'sbo', 'SalBow3G0838' => 'sbo', 'SalBow4G1674' => 'sbo', 'SalBow4G2454' => 'sbo', 'SalBow4G2481' => 'sbo', 'SalBow5G1448' => 'sbo', 'SalBow5G5639' => 'sbo', 'SalBow6G7133' => 'sbo', 'Sc01g0001620' => 'sci', 'Sc07g0007080' => 'sci', 'Sc07g0009580' => 'sci', 'Sc10g0005800' => 'sci', 'Sc12g0001470' => 'sci', 'Sc13g0008470' => 'sci', 'Sc19g0000010' => 'sci', 'Sc19g0001630' => 'sci', 'Sed0000598' => 'sed', 'Sed0001209' => 'sed', 'Sed0002997' => 'sed', 'Sed0003954' => 'sed', 'Sed0008354' => 'sed', 'Sed0013562' => 'sed', 'Sed0015374' => 'sed', 'Sed0016891' => 'sed', 'Sed0023661' => 'sed', 'Sed0027864' => 'sed', 'SEGI_21055' => 'sgi', 'SEGI_32652' => 'sgi', 'SGA_v2.0_scaffold126G33779' => 'sas', 'SGA_v2.0_scaffold2G01075' => 'sas', 'SGA_v2.0_scaffold343G49463' => 'sas', 'SGA_v2.0_scaffold385G50456' => 'sas', 'SGA_v2.0_scaffold41G15696' => 'sas', 'SGA_v2.0_scaffold515G52658' => 'sas', 'SGA_v2.0_scaffold832G53651' => 'sas', 'SGA_v2.0_scaffold94G28603' => 'sas', 'SMO146G0272' => 'smo', 'SMO351G0189' => 'smo', 'Solyc03g026080.3' => 'sly', 'Solyc06g005580.4' => 'sly', 'Solyc08g080500.3' => 'sly', 'Solyc09g010880.3' => 'sly', 'Solyc10g050105.1' => 'sly', 'Solyc11g013320.2' => 'sly', 'Sopen03g004920' => 'spe', 'Sopen06g001540' => 'spe', 'Sopen08g028820' => 'spe', 'Sopen09g005620' => 'spe', 'Sopen11g008330' => 'spe', 'Sp1g11310' => 'spa', 'Sp1g39140' => 'spa', 'Sp2g01460' => 'spa', 'Sp4g11860' => 'spa', 'Sp5g08600' => 'spa', 'Sp5g33030' => 'spa', 'Sp6g35640' => 'spa', 'Sp7g21150' => 'spa', 'TAR369G0277' => 'tar', 'TAR374G0080' => 'tar', 'TAR375G0636' => 'tar', 'TAR381G0368' => 'tar', 'TAR623G0554' => 'tar', 'TAR629G2525' => 'tar', 'TAR636G2006' => 'tar', 'THA.LOC104801878' => 'tha', 'THA.LOC104805524' => 'tha', 'THA.LOC104806561' => 'tha', 'THA.LOC104809418' => 'tha', 'THA.LOC104814328' => 'tha', 'THA.LOC104815533' => 'tha', 'THA.LOC104815787' => 'tha', 'THA.LOC104818031' => 'tha', 'THA.LOC104824752' => 'tha', 'THA.LOC104827404' => 'tha', 'Thecc.03G172100' => 'tca', 'Thecc.03G272600' => 'tca', 'Thecc.05G038300' => 'tca', 'Thecc.06G069000' => 'tca', 'Thecc.08G115300' => 'tca', 'Thecc.09G320200' => 'tca', 'Thhalv10008314m.g' => 'esa', 'Thhalv10010439m.g' => 'esa', 'Thhalv10011678m.g' => 'esa', 'Thhalv10014021m.g' => 'esa', 'Thhalv10016796m.g' => 'esa', 'Thhalv10018698m.g' => 'esa', 'Thhalv10023594m.g' => 'esa', 'Thhalv10025774m.g' => 'esa', 'TPR.G10749' => 'tpr', 'TPR.G10848' => 'tpr', 'TPR.G13089' => 'tpr', 'TPR.G16920' => 'tpr', 'TPR.G17398' => 'tpr', 'TPR.G21701' => 'tpr', 'TPR.G23466' => 'tpr', 'TPR.G23478' => 'tpr', 'TPR.G24312' => 'tpr', 'TPR.G24940' => 'tpr', 'TPR.G27643' => 'tpr', 'TPR.G30877' => 'tpr', 'TPR.G32697' => 'tpr', 'TPR.G32945' => 'tpr', 'TPR.G34324' => 'tpr', 'TPR.G37233' => 'tpr', 'TPR.G5577' => 'tpr', 'TWI12G0899' => 'twi', 'TWI12G1284' => 'twi', 'TWI18G0643' => 'twi', 'TWI23G0397' => 'twi', 'TWI75G0518' => 'twi', 'TWI77G0408' => 'twi', 'TWI79G0968' => 'twi', 'TWI81G0340' => 'twi', 'unitig_0.g2486' => 'ugi', 'unitig_26.g9193' => 'ugi', 'unitig_26.g9709' => 'ugi', 'unitig_699.g19817' => 'ugi', 'unitig_746.g26729' => 'ugi', 'vmacro08649' => 'vma', 'vmacro09850' => 'vma', 'vmacro12523' => 'vma', 'vmacro13928' => 'vma', 'vmacro14540' => 'vma', 'vmacro20163' => 'vma', 'VMungo0251G1877' => 'vmu', 'VMungo0331G1192' => 'vmu', 'VMungo0464G2150' => 'vmu', 'VMungo0540G1121' => 'vmu', 'VMungo0540G1235' => 'vmu', 'VMungo0540G1503' => 'vmu', 'VMungo0720G3167' => 'vmu', 'VMungo1080G0290' => 'vmu', 'VMungo1080G0365' => 'vmu', 'VMungo1080G0854' => 'vmu', 'VMungo1215G0540' => 'vmu', 'VMungo1215G1014' => 'vmu', 'VMungo1258G0001' => 'vmu', 'VMungo1309G0265' => 'vmu', 'Zm00001eb021350' => 'zma', 'Zm00001eb031860' => 'zma', 'Zm00001eb073680' => 'zma', 'Zm00001eb103190' => 'zma', 'Zm00001eb124440' => 'zma', 'Zm00001eb164560' => 'zma', 'Zm00001eb198580' => 'zma', 'Zm00001eb198590' => 'zma', 'Zm00001eb209810' => 'zma', 'Zm00001eb224240' => 'zma', 'Zm00001eb319050' => 'zma' ) $gf_id = 'HOM05D000659' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000659' ) $data_identifier = 'HOM05D000659' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 29, 'aar' => (int) 9, 'aag' => (int) 3, 'ach' => (int) 10, 'amhyb' => (int) 4, 'aly' => (int) 9, 'aox' => (int) 5, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 28, 'bol' => (int) 13, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'cbr' => (int) 9, 'ccan' => (int) 7, 'cde' => (int) 3, 'cfa' => (int) 4, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 5, 'din' => (int) 14, 'dzi' => (int) 13, 'eca' => (int) 6, 'bvu' => (int) 6, 'egr' => (int) 8, 'fan' => (int) 30, 'fve' => (int) 7, 'gma' => (int) 13, 'ghi' => (int) 28, 'gra' => (int) 13, 'vvi' => (int) 6, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 10, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 11, 'lja' => (int) 7, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 4, 'mdo' => (int) 31, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 10, 'nnu' => (int) 6, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 7, 'pco' => (int) 2, 'ppe' => (int) 7, 'psa' => (int) 10, 'pso' => (int) 8, 'qlo' => (int) 6, 'rch' => (int) 9, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 10, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 8, 'smo' => (int) 2, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 8, 'tar' => (int) 7, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 17, 'twi' => (int) 8, 'ugi' => (int) 5, 'vma' => (int) 6, 'vmu' => (int) 14, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb319050' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1